Proteome Profiling by 2D-Liquid Chromatography Method for Wheat-Rust Interaction.
Identifieur interne : 000060 ( Main/Exploration ); précédent : 000059; suivant : 000061Proteome Profiling by 2D-Liquid Chromatography Method for Wheat-Rust Interaction.
Auteurs : Semra Hasançebi [Turquie]Source :
- Methods in molecular biology (Clifton, N.J.) [ 1940-6029 ] ; 2017.
Descripteurs français
- KwdFr :
- Basidiomycota (physiologie), Chromatographie en phase liquide (méthodes), Interactions hôte-pathogène (MeSH), Maladies des plantes (microbiologie), Protéines végétales (analyse), Protéines végétales (isolement et purification), Protéines végétales (métabolisme), Protéomique (méthodes), Spectrométrie de masse (méthodes), Triticum (composition chimique), Triticum (microbiologie), Triticum (métabolisme).
- MESH :
- analyse : Protéines végétales.
- composition chimique : Triticum.
- isolement et purification : Protéines végétales.
- microbiologie : Maladies des plantes, Triticum.
- métabolisme : Protéines végétales, Triticum.
- méthodes : Chromatographie en phase liquide, Protéomique, Spectrométrie de masse.
- physiologie : Basidiomycota.
- Interactions hôte-pathogène.
English descriptors
- KwdEn :
- Basidiomycota (physiology), Chromatography, Liquid (methods), Host-Pathogen Interactions (MeSH), Mass Spectrometry (methods), Plant Diseases (microbiology), Plant Proteins (analysis), Plant Proteins (isolation & purification), Plant Proteins (metabolism), Proteomics (methods), Triticum (chemistry), Triticum (metabolism), Triticum (microbiology).
- MESH :
- chemical , analysis : Plant Proteins.
- chemical , isolation & purification : Plant Proteins.
- chemical , metabolism : Plant Proteins.
- chemistry : Triticum.
- metabolism : Triticum.
- methods : Chromatography, Liquid, Mass Spectrometry, Proteomics.
- microbiology : Plant Diseases, Triticum.
- physiology : Basidiomycota.
- Host-Pathogen Interactions.
Abstract
Wheat-rust interactions are extremely complex biological processes which are accompanied with the defense/attack responses to survive and overcome pathogen attack or plant defense. Understanding of molecular mechanism of these interactions is a promising way to develop sustainable combat. Therefore, many studies have been performed to reveal the active host and pathogen-derived genes and their products during the infection or defense using different approaches for many decades. Particularly proteomics technology and proteome profiling which is a large scale analysis of a protein mixture to reveal differently expressed proteins under a certain conditions has become a very important tool for providing real insights into the extremely complex interactions. Moreover, this type of research has the potential to explore target proteins/genes such as effectors that can be used in disease management strategies. Hence, in this chapter we describe the proteome profiling protocols by using 2D-LC system.
DOI: 10.1007/978-1-4939-7249-4_9
PubMed: 28856644
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Proteome Profiling by 2D-Liquid Chromatography Method for Wheat-Rust Interaction.</title><author><name sortKey="Hasancebi, Semra" sort="Hasancebi, Semra" uniqKey="Hasancebi S" first="Semra" last="Hasançebi">Semra Hasançebi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics and Bioengineering, Trakya University, Faculty of Engineering, Ahmet Karadeniz Campus, Edirne, Turkey. semrahasancebi@trakya.edu.tr.</nlm:affiliation><country xml:lang="fr">Turquie</country><wicri:regionArea>Department of Genetics and Bioengineering, Trakya University, Faculty of Engineering, Ahmet Karadeniz Campus, Edirne</wicri:regionArea><wicri:noRegion>Edirne</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28856644</idno><idno type="pmid">28856644</idno><idno type="doi">10.1007/978-1-4939-7249-4_9</idno><idno type="wicri:Area/Main/Corpus">000054</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000054</idno><idno type="wicri:Area/Main/Curation">000054</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000054</idno><idno type="wicri:Area/Main/Exploration">000054</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Proteome Profiling by 2D-Liquid Chromatography Method for Wheat-Rust Interaction.</title><author><name sortKey="Hasancebi, Semra" sort="Hasancebi, Semra" uniqKey="Hasancebi S" first="Semra" last="Hasançebi">Semra Hasançebi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics and Bioengineering, Trakya University, Faculty of Engineering, Ahmet Karadeniz Campus, Edirne, Turkey. semrahasancebi@trakya.edu.tr.</nlm:affiliation><country xml:lang="fr">Turquie</country><wicri:regionArea>Department of Genetics and Bioengineering, Trakya University, Faculty of Engineering, Ahmet Karadeniz Campus, Edirne</wicri:regionArea><wicri:noRegion>Edirne</wicri:noRegion></affiliation></author></analytic><series><title level="j">Methods in molecular biology (Clifton, N.J.)</title><idno type="eISSN">1940-6029</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (physiology)</term><term>Chromatography, Liquid (methods)</term><term>Host-Pathogen Interactions (MeSH)</term><term>Mass Spectrometry (methods)</term><term>Plant Diseases (microbiology)</term><term>Plant Proteins (analysis)</term><term>Plant Proteins (isolation & purification)</term><term>Plant Proteins (metabolism)</term><term>Proteomics (methods)</term><term>Triticum (chemistry)</term><term>Triticum (metabolism)</term><term>Triticum (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Basidiomycota (physiologie)</term><term>Chromatographie en phase liquide (méthodes)</term><term>Interactions hôte-pathogène (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Protéines végétales (analyse)</term><term>Protéines végétales (isolement et purification)</term><term>Protéines végétales (métabolisme)</term><term>Protéomique (méthodes)</term><term>Spectrométrie de masse (méthodes)</term><term>Triticum (composition chimique)</term><term>Triticum (microbiologie)</term><term>Triticum (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Chromatography, Liquid</term><term>Mass Spectrometry</term><term>Proteomics</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Protéines végétales</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Chromatographie en phase liquide</term><term>Protéomique</term><term>Spectrométrie de masse</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Host-Pathogen Interactions</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Interactions hôte-pathogène</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Wheat-rust interactions are extremely complex biological processes which are accompanied with the defense/attack responses to survive and overcome pathogen attack or plant defense. Understanding of molecular mechanism of these interactions is a promising way to develop sustainable combat. Therefore, many studies have been performed to reveal the active host and pathogen-derived genes and their products during the infection or defense using different approaches for many decades. Particularly proteomics technology and proteome profiling which is a large scale analysis of a protein mixture to reveal differently expressed proteins under a certain conditions has become a very important tool for providing real insights into the extremely complex interactions. Moreover, this type of research has the potential to explore target proteins/genes such as effectors that can be used in disease management strategies. Hence, in this chapter we describe the proteome profiling protocols by using 2D-LC system.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28856644</PMID><DateCompleted><Year>2018</Year><Month>05</Month><Day>07</Day></DateCompleted><DateRevised><Year>2018</Year><Month>08</Month><Day>09</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1940-6029</ISSN><JournalIssue CitedMedium="Internet"><Volume>1659</Volume><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>Methods in molecular biology (Clifton, N.J.)</Title><ISOAbbreviation>Methods Mol Biol</ISOAbbreviation></Journal><ArticleTitle>Proteome Profiling by 2D-Liquid Chromatography Method for Wheat-Rust Interaction.</ArticleTitle><Pagination><MedlinePgn>99-113</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/978-1-4939-7249-4_9</ELocationID><Abstract><AbstractText>Wheat-rust interactions are extremely complex biological processes which are accompanied with the defense/attack responses to survive and overcome pathogen attack or plant defense. Understanding of molecular mechanism of these interactions is a promising way to develop sustainable combat. Therefore, many studies have been performed to reveal the active host and pathogen-derived genes and their products during the infection or defense using different approaches for many decades. Particularly proteomics technology and proteome profiling which is a large scale analysis of a protein mixture to reveal differently expressed proteins under a certain conditions has become a very important tool for providing real insights into the extremely complex interactions. Moreover, this type of research has the potential to explore target proteins/genes such as effectors that can be used in disease management strategies. Hence, in this chapter we describe the proteome profiling protocols by using 2D-LC system.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hasançebi</LastName><ForeName>Semra</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Genetics and Bioengineering, Trakya University, Faculty of Engineering, Ahmet Karadeniz Campus, Edirne, Turkey. semrahasancebi@trakya.edu.tr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Methods Mol Biol</MedlineTA><NlmUniqueID>9214969</NlmUniqueID><ISSNLinking>1064-3745</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002853" MajorTopicYN="N">Chromatography, Liquid</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="Y">Host-Pathogen Interactions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013058" MajorTopicYN="N">Mass Spectrometry</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040901" MajorTopicYN="N">Proteomics</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014908" MajorTopicYN="N">Triticum</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">2D–LC</Keyword><Keyword MajorTopicYN="Y">Defense</Keyword><Keyword MajorTopicYN="Y">Leaf protein extraction</Keyword><Keyword MajorTopicYN="Y">PF2D</Keyword><Keyword MajorTopicYN="Y">Plant–pathogen interaction</Keyword><Keyword MajorTopicYN="Y">Proteome profiling</Keyword><Keyword MajorTopicYN="Y">Proteomics</Keyword><Keyword MajorTopicYN="Y">Stripe rust</Keyword><Keyword MajorTopicYN="Y">Wheat</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>9</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>9</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>5</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28856644</ArticleId><ArticleId IdType="doi">10.1007/978-1-4939-7249-4_9</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Turquie</li></country></list><tree><country name="Turquie"><noRegion><name sortKey="Hasancebi, Semra" sort="Hasancebi, Semra" uniqKey="Hasancebi S" first="Semra" last="Hasançebi">Semra Hasançebi</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/RustEffectorV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000060 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000060 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= RustEffectorV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:28856644
|texte= Proteome Profiling by 2D-Liquid Chromatography Method for Wheat-Rust Interaction.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:28856644" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a RustEffectorV1
| This area was generated with Dilib version V0.6.37. |  |